macaw.persistenceLayer.production
Class SQLOntologyTermManager

java.lang.Object
  macaw.persistenceLayer.production.SQLCurationConceptManager
      macaw.persistenceLayer.production.SQLOntologyTermManager

public class SQLOntologyTermManager
extends SQLCurationConceptManager

Copyright 2010 Medical Research Council Unit for Lifelong Health and Ageing Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

Version:

1.0

Author:

Kevin Garwood (kgarwood@users.sourceforge.net)

Field Summary

Fields inherited from class macaw.persistenceLayer.production.SQLCurationConceptManager

log

Constructor Summary

SQLOntologyTermManager(SQLChangeEventManager changeEventManager)

Method Summary

void	addOntologyTerm(java.sql.Connection connection, User user, OntologyTerm ontologyTerm)
void	checkOntologyTermExists(java.sql.Connection connection, OntologyTerm targetOntologyTerm)
void	clear(java.sql.Connection connection)
void	createTable(java.sql.Connection connection)
void	deleteOntologyTerms(java.sql.Connection connection, User user, java.util.ArrayList<OntologyTerm> ontologyTermsToDelete)
java.util.ArrayList<OntologyTerm>	getAllOntologyTerms(java.sql.Connection connection, User user)
int	getOntologyTermIdentifier(java.sql.Connection connection, OntologyTerm targetOntologyTerm)
OntologyTerm	getOriginalOntologyTerm(java.sql.Connection connection, OntologyTerm targetOntologyTerm)
void	updateOntologyTerm(java.sql.Connection connection, User user, OntologyTerm revisedOntologyTerm)

Methods inherited from class macaw.persistenceLayer.production.SQLCurationConceptManager

registerChangeEvent, registerChangeEvents, setLog

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SQLOntologyTermManager

public SQLOntologyTermManager(SQLChangeEventManager changeEventManager)

Method Detail

createTable

public void createTable(java.sql.Connection connection)
                 throws MacawException

Throws:

MacawException

getAllOntologyTerms

public java.util.ArrayList<OntologyTerm> getAllOntologyTerms(java.sql.Connection connection,
                                                             User user)
                                                      throws MacawException

Throws:

MacawException

addOntologyTerm

public void addOntologyTerm(java.sql.Connection connection,
                            User user,
                            OntologyTerm ontologyTerm)
                     throws MacawException

Throws:

MacawException

updateOntologyTerm

public void updateOntologyTerm(java.sql.Connection connection,
                               User user,
                               OntologyTerm revisedOntologyTerm)
                        throws MacawException

Throws:

MacawException

deleteOntologyTerms

public void deleteOntologyTerms(java.sql.Connection connection,
                                User user,
                                java.util.ArrayList<OntologyTerm> ontologyTermsToDelete)
                         throws MacawException

Throws:

MacawException

getOntologyTermIdentifier

public int getOntologyTermIdentifier(java.sql.Connection connection,
                                     OntologyTerm targetOntologyTerm)
                              throws MacawException

Throws:

MacawException

clear

public void clear(java.sql.Connection connection)
           throws MacawException

Throws:

MacawException

checkOntologyTermExists

public void checkOntologyTermExists(java.sql.Connection connection,
                                    OntologyTerm targetOntologyTerm)
                             throws MacawException

Throws:

MacawException

getOriginalOntologyTerm

public OntologyTerm getOriginalOntologyTerm(java.sql.Connection connection,
                                            OntologyTerm targetOntologyTerm)
                                     throws MacawException

Throws:

MacawException